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Implementation of 2D unet. Use as base for user projects.

PDE inference from limited spatio-temporal data

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".

Library for producing and processing on the Adaptive Particle Representation (APR)

MATLAB code for Lp-Adaptation: Design Centering and Volume Approximation

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

private repo with testing jupyter notebooks

polishing pipelines

drop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

Analysis of ARE in liver tissue. with Julien Delpierre

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Region Competition algorithm implemented as an ITK filter (C++).