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Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Region Competition algorithm implemented as an ITK filter (C++).

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Analysis of ARE in liver tissue. with Julien Delpierre

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

drop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime

polishing pipelines

private repo with testing jupyter notebooks

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

MATLAB code for Lp-Adaptation: Design Centering and Volume Approximation

Library for producing and processing on the Adaptive Particle Representation (APR)

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

PDE inference from limited spatio-temporal data